PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.302590.1
Common NameCsa5G156220, Csa_5G156220, LOC101221467
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 252aa    MW: 28402.2 Da    PI: 7.5438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.302590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-1275125355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       h  +Er+RR+++ s + +Lr+llP       ++K s ++  +++v YI+++q
  Cucsa.302590.1  75 IIHRDVERQRRQEMSSLYTTLRSLLPLeY---LKGKRSISDHMQETVSYIQHMQ 125
                     5699***********************77...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.97E-1271129No hitNo description
SuperFamilySSF474592.62E-1471143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.47172124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-976125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1076140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-678130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEMFNAESPF SFDVGEDLVP LPSLPSSSVI SPPLDNYGNR VSQKPKNGRR KKPLPNTCND  60
DGGDENHDEQ KKKKIIHRDV ERQRRQEMSS LYTTLRSLLP LEYLKGKRSI SDHMQETVSY  120
IQHMQRRIQQ LKDKRGTLRE LASQTTVAIA GTTETLNSSE RASAVVRAKD GIGIQVVLDT  180
ATKQRLPLSI FVQALVSEGL EILNCISNRL NERFIHTIEC QPLLNDDGCY PTIDVSVLQH  240
KLANLEYYPL D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6558510.0KM655851.1 Cucumis sativus bHLH transcription factor (Csa5G156220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295816.10.0transcription factor bHLH118-like
TrEMBLA0A097IYN60.0A0A097IYN6_CUCSA; BHLH transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-34bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Shang Y, et al.
    Plant science. Biosynthesis, regulation, and domestication of bitterness in cucumber.
    Science, 2014. 346(6213): p. 1084-8
    [PMID:25430763]